Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs72494040 chr4:165646546 T/C 5.68E-5 492 30.77 32.9 44.32 KM Plot
PRAD rs72619924 chr3:24241447 T/A 2.04E-8 493 31.27 28.67 20.93 KM Plot
PRAD rs72619926 chr3:24245017 C/T 8.97E-6 491 30.8 31.25 23.32 KM Plot
PRAD rs72687374 chr8:143382143 C/T 6.41E-5 483 30.97 32.05 28.13 KM Plot
PRAD rs72687888 chr4:165646366 A/G 5.68E-5 492 30.77 32.9 44.32 KM Plot
PRAD rs72687891 chr4:165646451 G/A 5.68E-5 492 30.77 32.9 44.32 KM Plot
PRAD rs7271050 chr20:42073941 A/G 1.02E-5 494 27.77 32.43 30.33 KM Plot
PRAD rs72725223 chr5:7316124 C/T 2.43E-5 485 31.18 31 22.15 KM Plot
PRAD rs72741167 chr15:68612890 T/G 0.000172 479 31.28 31.37 22.95 KM Plot
PRAD rs72762182 chr9:124283294 T/G 1.79E-6 488 30.97 31.87 24.27 KM Plot
PRAD rs72770399 chr9:138674133 C/T 2.05E-5 471 31.87 29.1 18.1 KM Plot
PRAD rs72770401 chr9:138674428 C/G 1.99E-5 472 31.87 28.7 18.1 KM Plot
PRAD rs72776374 chr1:246447168 G/A 6.17E-5 489 30.8 31.1 31.38 KM Plot
PRAD rs72791551 chr16:83967284 C/T 0.000157 488 30.8 32.8 33.47 KM Plot
PRAD rs72791552 chr16:83967446 G/C 0.000163 487 30.78 32.8 33.47 KM Plot